math.transforms.bwt: faster version of bwt if only needing transform.
parent
5f3ded0b1a
commit
e62da0bc64
|
@ -1,6 +1,8 @@
|
|||
! Copyright (C) 2012 John Benediktsson
|
||||
! See http://factorcode.org/license.txt for BSD license
|
||||
USING: tools.test ;
|
||||
USING: kernel tools.test ;
|
||||
IN: math.transforms.bwt
|
||||
|
||||
{ "asdf" } [ "asdf" bwt ibwt ] unit-test
|
||||
|
||||
{ t } [ "hello" [ bwt nip ] [ bwt* ] bi = ] unit-test
|
||||
|
|
|
@ -1,10 +1,17 @@
|
|||
! Copyright (C) 2012 John Benediktsson
|
||||
! See http://factorcode.org/license.txt for BSD license
|
||||
USING: assocs fry kernel sequences sequences.rotated sorting ;
|
||||
USING: accessors assocs fry kernel math sequences
|
||||
sequences.rotated sorting suffix-arrays.private ;
|
||||
IN: math.transforms.bwt
|
||||
|
||||
! Semi-efficient versions of Burrows-Wheeler Transform
|
||||
|
||||
: bwt* ( seq -- newseq )
|
||||
[
|
||||
dup suffixes natural-sort
|
||||
[ dup from>> [ to>> ] [ nip ] if-zero 1 - over nth ]
|
||||
] [ map-as ] bi nip ;
|
||||
|
||||
: bwt ( seq -- i newseq )
|
||||
dup all-rotations natural-sort
|
||||
[ [ sequence= ] with find drop ]
|
||||
|
|
Loading…
Reference in New Issue