172 lines
10 KiB
Plaintext
172 lines
10 KiB
Plaintext
>ONE Homo sapiens alu
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GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA
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TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT
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AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG
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GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG
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CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT
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GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA
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GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
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TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG
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AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA
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GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT
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AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC
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AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG
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GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC
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CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG
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AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT
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TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA
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TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT
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GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG
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TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT
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CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG
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CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG
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TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA
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CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG
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AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG
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GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC
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TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA
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TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA
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GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT
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GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC
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ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT
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TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
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CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG
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CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG
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GGCGACAGAGCGAGACTCCG
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>TWO IUB ambiguity codes
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cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg
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tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa
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NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt
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cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga
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gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa
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HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca
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tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt
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tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt
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acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct
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tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt
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gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa
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accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt
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RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt
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tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag
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cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg
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ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat
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actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg
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YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa
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KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata
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aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa
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aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg
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gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc
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tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK
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tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt
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ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg
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ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa
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BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt
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aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc
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tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc
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cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac
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aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga
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tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga
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aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD
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gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg
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ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV
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taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa
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ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat
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gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg
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gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa
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tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt
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tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt
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taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca
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cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag
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aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt
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cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt
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ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW
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attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag
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ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa
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attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc
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tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta
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>THREE Homo sapiens frequency
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aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga
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atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc
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ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc
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atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa
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tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca
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tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag
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gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat
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tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt
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gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc
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gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc
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atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc
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taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta
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ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg
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acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag
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ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg
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ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt
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cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg
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ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt
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aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag
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attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac
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acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat
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tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca
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attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt
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aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt
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tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg
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ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga
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gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac
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caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct
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taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga
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ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg
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ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat
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gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga
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ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact
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aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc
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cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt
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gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat
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ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt
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tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata
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tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac
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ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga
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tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac
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gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat
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ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc
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actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc
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gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca
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ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata
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tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca
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atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata
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aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat
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tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt
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ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat
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acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga
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gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata
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gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg
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tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac
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gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga
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gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat
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tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta
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acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga
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tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata
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catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga
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attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt
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ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt
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ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg
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gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa
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tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg
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tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct
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ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc
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gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta
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ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact
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tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc
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ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc
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tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt
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ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca
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actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac
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gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc
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gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag
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accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga
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gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct
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cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta
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tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat
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atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt
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ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta
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ggaagtgaaaagataaatat
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